Dehalogenation of Dichlorobenzoates by Acidovorax sp. KKS102’s beta class Glutathione S-transferase and its Mutants
DOI:
https://doi.org/10.47430/ujmr.2161.009Keywords:
Glutathione s-transferase, Mutants, Beta class, dehalogenation, dichlorobenzoatesAbstract
Glutathione s-transferases (GSTs) are ubiquitous family of enzymes well known for their detoxification function. Several different classes of the enzyme exist with beta class being the one specific to bacteria. Recently, the enzymes were found to exhibit other functions, in particular dehalogenation of some organic compounds. This property could be extremely useful especially in the bioremediation of some organochlorine pollutants. A beta class GST from Acidovorax sp. KKS102 designated as KKS-BphK was previously cloned and characterized. In this research, molecular docking study was first employed to investigate the possibility of binding of the protein to dichlorobenzoates; byproducts of polychlorobiphenyl degradation. The wild type enzyme together with other mutants were expressed using E. coli BL21 (DE3) cells and purified. The dehalogenation function of the enzymes against dichlorobenzoate derivatives was also investigated through chloride ion detection assay. The results of the molecular docking study indicated the possibility of binding of KKS-BphK to these substrates. Both the wild type and the mutants showed dehalogenation function against the model substrate 1-chloro-2,4- dinitrobenzene (CDNB). Furthermore, the enzymes also showed dehalogenation function against 2,4-dichlorobenzoate derivatives. However, in testing the activity of the enzymes toward 2,5- dichlorobenoate and 2,6-dichlorobenzoate, only K107T and A180P mutants showed some activity while the wild type and C10F mutant showed zero activity. The research indicates the usefulness of beta class GST in the dehalogenation of dichlorobenzoates in addition to their known function of dehalogenating monochlorobenzoates.
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References
Adebusoye, S. A. (2017). Biological degradation of 4-chlorobenzoic acid by a PCB- metabolizing bacterium through a pathway not involving (chloro) catechol. Biodegradation, 28(1): 37-51.
https://doi.org/10.1007/s10532-016-9776-3
Adebusoye, S. A., Adeosun, O. A., & Olofinlade,B. B. (2017). Degradation of 2, 5-and 3, 4-dichlorobenzoic acids by bacterial species indigenous to rotten onion bulb and PCB-contaminated soil. Biocatalysis and Agricultural Biotechnology, 12:248- 252.
https://doi.org/10.1016/j.bcab.2017.10.008
Benkert, P., Biasini, M., Schwede, T (2011). Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics 27, 343-350.
https://doi.org/10.1093/bioinformatics/btq662
Bhatt, P., Rene, E. R., Kumar, A. J., Zhang, W., & Chen, S. (2020). Binding interaction of allethrin with esterase: Bioremediation potential and mechanism. Bioresource technology, (3)15 1-24-130.
https://doi.org/10.1016/j.biortech.2020.123845
Bradford, M. M. (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Analytical biochemistry, 72(1- 2): 248-254.
https://doi.org/10.1016/0003-2697(76)90527-3
Goodsell, D. S., Morris, G. M., & Olson, A. J. (1996). Automated docking of flexible ligands: applications of AutoDock. Journal of Molecular Recognition, 9(1):1-5.
https://doi.org/10.1002/(SICI)1099-1352(199601)9:1<1::AID-JMR241>3.0.CO;2-6
Harmon, S. M. (2015). The toxicity of persistent organic pollutants to aquatic organisms: Comprehensive Analytical Chemistry. Elsevier 67, 587-613.
https://doi.org/10.1016/B978-0-444-63299-9.00018-1
Mahmoud, S. A. H., Abboud, M. M., Khasawneh, A., & Mohammed, N. A. (2019). The Effects of Chloride Position on the Aerobic Degradation of Chlorobenzoates by Klebsiella pneumoniae. Jordan Journal of Biological Sciences, 12(4):564-571.
McGuinness, M., Mazurkiewicz, V., Brennan, E., & Dowling, D. (2007). Dechlorination of Pesticides by a Specific Bacterial Glutathione S-transferase, BphKLB400: Potential for Bioremediation. Engineering in Life Sciences, 7(6):611- 615.
https://doi.org/10.1002/elsc.200720218
O'Boyle, N. M., Banck, M., James, C. A., Morley, C., Vandermeersch, T., & Hutchison, G. R. (2011). Open Babel: An open chemical toolbox. Journal of cheminformatics, 3(1):1.
https://doi.org/10.1186/1758-2946-3-33
Ohtsubo, Y., Maruyama, F., Mitsui, H., Nagata, Y., & Tsuda, M. (2012). Complete genome sequence of Acidovorax sp. strain KKS102, a polychlorinated- biphenyl degrader: Am Soc Microbiol. 67(6)-167-174.
https://doi.org/10.1128/JB.01848-12
Ponce, B. L., Latorre, V. K., González, M., & Seeger, M. (2011). Antioxidant compounds improved PCB-degradation by Burkholderia xenovorans strain LB400. Enzyme and Microbial Technology, 49(6-7):509-516.
https://doi.org/10.1016/j.enzmictec.2011.04.021
Shehu, D., Abdullahi, N., & Alias, Z. (2019). Cytosolic Glutathione S-transferase in Bacteria: A Review. Polish Journal of Environmental Studies, 28(2):1-6.
https://doi.org/10.15244/pjoes/85200
Shehu, D., & Alias, Z. (2018). Functional Role of Tyr12 in the Catalytic Activity of Novel Zeta-like Glutathione S-transferase
https://doi.org/10.1007/s10930-018-9774-x from Acidovorax sp. KKS102. The protein journal, 37(3): 261-269.
Shehu, D., & Alias, Z. (2019). Dechlorination of polychlorobiphenyl degradation metabolites by a recombinant glutathione S-transferase from Acidovorax sp. KKS 102. FEBS open bio, 9(3): 408-419.
https://doi.org/10.1002/2211-5463.12405
T'Syen, J., Raes, B., Horemans, B., Tassoni, R., Leroy, B., Lood, C., Kohler, H.-P. E. (2018). Catabolism of the groundwater micropollutant 2, 6-dichlorobenzamide beyond 2, 6-dichlorobenzoate is plasmid encoded in Aminobacter sp. MSH1. Applied microbiology and biotechnology, 102(18):7963-7979.
Waterhouse, A., Bertoni, M., Bienert, S., Studer, G., Tauriello, G., Gumienny, R., Heer, F.T., de Beer, T.A.P.,
Rempfer, C., Bordoli, L., Lepore, R., Schwede, T. SWISS-MODEL: homology modelling of protein structures and complexes. Nucleic Acids Res. 46(W1), W296-W303 (2018).
https://doi.org/10.1093/nar/gky427
Xu, W., Wang, X., & Cai, Z. (2013). Analytical chemistry of the persistent organic pollutants identified in the Stockholm Convention: A review. Analytica Chimica Acta, 790:1-13.
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